Publications

• Yin Shen, Quan Zhong, Tian Liu, Zi Wen, Wei Shen, Li Li*, CharID: a two-step model for universal prediction of interactions between chromatin accessible regions, Briefings in Bioinformatics, 2022.
• Yin Shen, Ling-Ling Chen, Junxiang Gao*, CharPlant: A De Novo Open Chromatin Region Prediction Tool for Plant Genomes, Genomics, Proteomics & Bioinformatics, 2021.
• Drew Sturtevant†, Shaoping Lu†, Zhi-Wei Zhou†, Yin Shen†, et al, Ling-Ling Chen*, Kent D.Chapman*, Liang Guo*. The genome of jojoba (Simmondsia chinensis): A taxonomically isolated species that directs wax ester accumulation in its seeds. Science Advances, 2020.
• Ji-Wei Chang, Yuduan Ding, Muhammad Tahir ul Qamar, Yin Shen, Junxiang Gao*, Ling-LingChen*, A deep learning model based on sparse auto-encoder for prioritizing cancer-related genes and drug target combinations, Carcinogenesis, 2019.